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Scientific papers 2016

  1. Abarenkov K,…[ Larsson T],… ,[ Panova M],… ,[Svensson O, Töpel M],… et al. Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15 (26 Sep 2016) doi: 10.3897/mycokeys.16.10000
     
  2. Adrian-Kalchhauser I, Burkhardt-Holm P. (2016) An eDNA Assay to Monitor a Globally Invasive Fish Species from Flowing Freshwater. PLoS ONE 11(1): e0147558. doi:10.1371/journal.pone.0147558
     
  3. André C, Svedäng H, Knutsen H, Dahle G, Jonsson P, Ring AK, Sköld M, Jorde PE.
    Population structure in Atlantic cod in the eastern North Sea-Skagerrak-Kattegat: early life stage dispersal and adult migration. BMC Research Notes 2016, 9:63  doi:10.1186/s13104-016-1878-9
     
  4. Antonelli A, Hettling H, Condamine FL, Vos K, Nielsson RH, Sanderson J, Sauquet H, Schaarn R, Silvestro D, Töpel M, Bacon CD, Oxelman B, Vos RA. Towards a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa. Systematic Biology (2016), doi:10.1093/sysbio/syw066
    More information about the project: http://www.supersmart-project.org/
     
  5. Appelqvist C, Havenhand JNA phenological shift in the time of recruitment of the shipworm, Teredo navalis L., mirrors marine climate change. Ecology and Evolution 
    doi:10.1002/ece3.2126
     
  6. Ardehed A, Johansson D, Sundqvist L, Schagerström E, Zagrodzka Z, Kovaltchouk NA, Bergström L, Kautsky L, Rafajlovic M, Pereyra RT, Johannesson K. (2016) Divergence within and among Seaweed Siblings (Fucus vesiculosus and F. radicans) in the Baltic Sea. PLoS ONE 11(8): e0161266. doi:10.1371/journal.pone.0161266
     
  7. Blom EL, Mück I, Heubel K, Svensson O. Acoustic and visual courtship traits in two sympatric marine Gobiidae species – Pomatoschistus microps and Pomatoschistus minutusEnvironmental Biology of Fishes (2016). doi:10.1007/s10641-016-0550-5
     
  8. Bourlat SJ (Ed). Marine Genomics - Methods and Protocols. ISBN: 978-1-4939-3772-1 (Print) 978-1-4939-3774-5 (Online) Methods in Molecular Biology, Volume 1452, 2016
     
  9. Bourlat SJ , Haenel Q, Finnman J, Leray M. Preparation of Amplicon Libraries for Metabarcoding of Marine Eukaryotes Using Illumina MiSeq: The Dual-PCR Method. Marine Genomics, 2016. Volume 1452 of the series Methods in Molecular Biology pp 197-207
     
  10. Bunse C, Bertos-Fortis M, Sassenhagen I, Sildever S, Sjöqvist C, Godhe A, Gross S, Kremp A, Lips I, Lundholm N, Rengefors K, Sefbom J, Pinhassi J, Legrand C.  Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom. Frontiers in Microbiology (2016) 7:517. doi: 10.3389/fmicb.2016.00517
     
  11. Calosi P, De Wit P, Thor P, Dupont S. Will life find a way? Evolution of marine species under global change. Evolutionary Applications, (2016) 9: 1035–1042. doi:10.1111/eva.12418
     
  12. Caplat P, Edelaar P, Dudaniec RY, Green AJ, Okamura B, Cote J, Johan Ekroos J, Jonsson PR, Löndahl J, Tesson SVM, Petit EJ. Looking beyond the mountain: dispersal barriers in a changing world. Frontiers in Ecology and the Environment 2016; 14(5): 261–268, doi:10.1002/fee.1280
     
  13. Carey N, Dupont S, Sigwart JD. Sea Hare Aplysia punctata (Mollusca: Gastropoda) Can Maintain Shell Calcification under Extreme Ocean AcidificationThe Biological Bulletin 2016 231:2, 142-151
     
  14. Day JG, Tytor S, Egardt J, Applegren M, Rad-Menéndez C, Chepurnova O, Vyverman W, Godhe A. Challenges for the Maintenance and Cryopreservation of Multiple Isolates of Model Microorganisms: An Example Using the Marine Diatom Skeletonema marinoi. Biopreservation and Biobanking. 2016 Nov 29.
     
  15. De Wit P.  SNP Discovery Using Next Generation Transcriptomic Sequencing. Marine Genomics, 2016. Volume 1452 of the series Methods in Molecular Biology pp 81-95.
     
  16. De Wit P, Dupont S, Thor P. Selection on oxidative phosphorylation and ribosomal structure as a multigenerational response to ocean acidification in the common copepod Pseudocalanus acuspes. Evolutionary Applications, (2016) 9: 1112–1123.
     
  17. Dylus DV, Czarkwiani A, Stångberg J, Ortega-Martinez O, Dupont S, Oliveri P. Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks. EvoDevo 2016 7:2,
    doi: 10.1186/s13227-015-0039-x
     
  18. Fernandez-Ricaud L, Kourtchenko O, Zackrisson M, Warringer J, Blomberg A.
    PRECOG: a tool for automated extraction and visualization of fitness components in microbial growth phenomics. BMC Bioinformatics. 2016 17:249
     
  19. Franco-Belussi L, Nilsson Sköld H, de Oliveira C. Internal pigment cells respond to external UV radiation in frogs. Journal of Experimental Biology (2016)  doi: 10.1242/jeb.134973
     
  20. Frommel AY, Margulies D, Wexler JB, Stein MS, Scholey VP, Williamson JE, Bromhead D, Nicol S, Havenhand JNOcean acidification has lethal and sub-lethal effects on larval development of yellowfin tuna, Thunnus albacaresJournal of Experimental Marine Biology and Ecology,
    Volume 482, 2016, Pages 18–24
     
  21. Georgian SE, Dupont S, Kurman M, Butle, A, Strömberg  SM, Larsson AI, Cordes EE. (2016), Biogeographic variability in the physiological response of the cold-water coral Lophelia pertusa to ocean acidification. Marine Ecology
    doi:10.1111/maec.12373
     
  22. Godhe A, Sjöqvist C, Sildever S, Sefbom J, Harðardóttir S, Bertos-Fortis M, Bunse C, Gross S, Johansson E, Jonsson PR, Khandan S, Legrand C, Lips I, Lundholm N, Rengefors KE, Sassenhagen I, Suikkanen S, Sundqvist L, Kremp A. (2016). Physical barriers and environmental gradients cause spatial and temporal genetic differentiation of an extensive algal bloom. Journal of Biogeography (2016) doi: 10.1111/jbi.12722
     
  23. Hardisty AR,..[Bourlat S]…[Leidenberger S]…[Obst M]…et.al. BioVeL a virtual laboratory for data analysis and modelling in biodiversity science and ecologyBMC Ecology (2016) 16:49
    doi: 10.1186/s12898-016-0103-y
     
  24. Heuschele J, Nemming L, Tolstrup L, Kiørboe T, Nylund GM, Selander E. The sex specific metabolic footprint of Oithona davisaeJournal of Sea Research 117 (2016) 1–6
     
  25. Hu MY, Michael K, Kreiss CM, Stumpp M, Dupont S, Tseng Y and Lucassen M. Temperature modulates the effects of ocean acidification on intestinal ion transport in Atlantic cod, Gadus morhua. Frontiers in Physiology (2016) 7:198. doi: 10.3389/fphys.2016.00198
     
  26. Huyse T, Oeyen M, Larmuseau MH, Volckaert FA. Co-phylogeographic study of the flatworm Gyrodactylus gondae and its goby host Pomatoschistus minutus. Parasitology International, 2016 Dec 24;66(2):119-125. doi: 10.1016/j.parint.2016.12.008.
     
  27. Infantes E, Crouzy C, Moksnes P-O (2016) Seed Predation by the Shore Crab Carcinus maenas: A Positive Feedback Preventing Eelgrass Recovery? PLoS ONE 11(12): e0168128. doi:10.1371/journal.pone.0168128
     
  28. Johannesson K, Butlin RK. What explains rare and conspicuous colours in a snail? A test of time-series data against models of drift, migration or selection. Heredity advance online publication (2016); doi: 10.1038/hdy.2016.77
     
  29. Leray  M, Haenel Q, Bourlat SJ. Preparation of Amplicon Libraries for Metabarcoding of Marine Eukaryotes Using Illumina MiSeq: The Adapter Ligation Method. Marine Genomics, 2016.
    Volume 1452 of the series Methods in Molecular Biology pp 209-218
     
  30. Marques JP, Sotelo G, Larsson T, Johannesson K, Panova M, Faria R. Comparative mitogenomic analysis of three species of periwinkles: Littorina fabalis, L.obtusata and L. saxatilis. Marine Genomics (2016)
    http://dx.doi.org/10.1016/j.margen.2016.10.006
     
  31. Nasrolahi A , Havenhand J, Wrange AL,  Pansch C.
    Population and life-stage specific sensitivities to temperature and salinity stress in barnacles. Scientific Reports 6, Article number: 32263 (2016)
     
  32. Olsen J,...[Töpel M]... et al. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the seaNature (2016) doi:10.1038/nature16548
     
  33. Panova M , Aronsson H, Cameron RA, Dahl P, Godhe A, Lind U, Ortega-Martinez O, Pereyra R, Tesson SVM, Wrange AL, Blomberg A, Johannesson K. DNA Extraction Protocols for Whole-Genome Sequencing in Marine Organisms.
    Marine Genomics, 2016. Volume 1452 of the series Methods in Molecular Biology pp 13-44.
     
  34. Panova M, Nygren A, Jonsson PR, Leidenberger S. A molecular phylogeny of the north-east Atlantic species of the genus Idotea (Isopoda) with focus on the Baltic Sea. —Zoologica Scripta (2016), doi:10.1111/zsc.12200
     
  35. Prantoni, A. L., De Wit, P. and Erséus, C. (2016), First reports of Grania (Clitellata: Enchytraeidae) from Africa and South America: molecular phylogeny and descriptions of nine new species. Zoological Journal of the Linnean Society, 176: 485–510. doi: 10.1111/zoj.12333
     
  36. Rafajlović M, Emanuelsson A, Johannesson K, Butlin RK, Mehlig B. A universal mechanism generating clusters of differentiated loci during divergence-with-migrationEvolution 2016, doi: 10.1111/evo.12957
     
  37. Selander E, Heuschele J, Nylund GM, Pohnert G, Pavia H, Bjærke O, Pender-Healy LA, Tiselius P, Kiørboe T. (2016), Solid phase extraction and metabolic profiling of exudates from living copepods. PeerJ 4:e1529; DOI 10.7717/peerj.1529
     
  38. Sildever S, Sefbom J, Lips I, Godhe A. (2016), Competitive advantage and higher fitness in native populations of genetically structured planktonic diatoms. Environmental Microbiology. doi:10.1111/1462-2920.13372
     
  39. Sui Y, Kong H, Huang X, Dupont S, Hu M, Storch D, Pörtner HO, Lu W, Youji Wang Y. Combined effects of short-term exposure to elevated CO2 and decreased O2 on the physiology and energy budget of the thick shell mussel Mytilus coruscus. Chemosphere 2016, 155:207-216. doi:10.1016/j.chemosphere.2016.04.054
     
  40. Sunday JM,…[Dupont S], … et al. Ocean acidification can mediate biodiversity shifts by changing biogenic habitat. Nature Climate Change (2016) doi:10.1038/nclimate3161
     
  41. Sundqvist L, Keenan K, Zackrisson M, Prodöhl P, Kleinhans D. (2016), Directional genetic differentiation and relative migration. Ecology and Evolution. doi: 10.1002/ece3.2096
     
  42. Svensson O, Smith A, García-Alonso J, van Oosterhout C. (2016) Hybridization generates a hopeful monster: a hermaphroditic selfing cichlid. Royal Society Open Science
    doi: 10.1098/rsos.150684
     
  43. Turner LM, Alsterberg C, Turner AD, Girisha SK, Rai A, Havenhand JN, Venugopal MN, Karunasagar I, Godhe A.
    Pathogenic marine microbes influence the effects of climate change on a commercially important tropical bivalve.
    Scientific Reports 6, Article number: 32413 (2016)
    doi:10.1038/srep32413
     
  44. Töpel M, Zizka A, Calio MF, Scharn R, Silvestro D, Antonelli A. SpeciesGeoCoder: Fast Categorization of Species Occurrences for Analyses of Biodiversity, Biogeography, Ecology, and Evolution. Systematic Biology, first published online August 2, 2016 doi:10.1093/sysbio/syw064
     
  45. Ventura A, Schulz S, Dupont S. Maintained larval growth in mussel larvae exposed to acidified under-saturated seawater. 
    Scientific Reports 6, Article number: 23728 (2016). doi:10.1038/srep23728
     
  46. Vihtakari M, Havenhand J, Renaud PE, Hendriks IE. Variable Individual- and Population- Level Responses to Ocean Acidification, Frontiers in Marine Sciences, 29 April 2016 | http://dx.doi.org/10.3389/fmars.2016.00051
     
  47. Westram AM, Johannesson K. (2016) Parallel Speciation. In: Kliman, R.M. (ed.), Encyclopedia of Evolutionary Biology. vol. 3, pp. 212–219. Oxford: Academic Press.
     
  48. Wood HL, Sundell K, Almroth BC, Sköld HN, Eriksson SP. 2016 Population-dependent effects of ocean acidification. Proceedings Royal Society B 283: 20160163. http://dx.doi.org/10.1098/rspb.2016.0163
     
  49. Wrange A-L, Charrier G, Thonig A, Alm Rosenblad M, Blomberg A, Havenhand JN, Jonsson PR, André C. (2016) The Story of a Hitchhiker: Population Genetic Patterns in the Invasive Barnacle Balanus(Amphibalanus) improvisus Darwin 1854. PLoS ONE 11(1): e0147082. doi:10.1371/journal.pone.0147082
     
  50. Zackrisson M, Hallin J, Ottosson LG, Dahl P, Fernandez-Parada E, Ländström E, Fernandez-Ricaud L, Kaferle P, Skyman A, Stenberg S, Omholt S, Petrovič U, Warringer J, Blomberg A. Scan-o-matic: High-Resolution Microbial Phenomics at a Massive Scale.
    G3:Genes, Genomes, Genetics 2016 Sep 8; 6:3003
     
  51. Zimmerman J, Wentrup C, Sadowski M, Blazejak A, Gruber-Vodicka H, Ott J, Cronholm B, De Wit P, Erséus C, Dubilier N. Closely coupled evolutionary history of ecto- and endosymbionts from two distantly-related animal phylaMolecular Ecology (2016) doi: 10.1111/mec.13554

 
 

Scientific publications

 

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