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Scientific papers 2018

  1. Adrian-Kalchhauser I, Walser JC, Schwaiger M, Burkhardt-Holm P. RNA sequencing of early round goby embryos reveals that maternal experiences can shape the maternal RNA contribution in a wild vertebrate. BMC Evolutionary Biology, BMC series – open, inclusive and trusted 2018 18:34
  2. Amato A, Sabatino V, Nylund GM, Bergkvist J, Basu S, Andersson MX, Sanges R, Godhe A, Kiørboe T, Selander E, Ferrante MI. Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi. The ISME Journal 2018, doi:10.1038/s41396-018-0094-0
  3. Arnberg M, Calosi P, Spicer J, Taban I, Bamber S, Westerlund S, Vingen S, Baussant T, Bechmann R & Dupont S. Effects of oil and global environmental drivers on two keystone marine invertebrates. Scientific Reports. (2018) 8: 17380. doi:10.1038/s41598-018-35623-w

  4. Asnicar D, Ašmonaitė G, Birgersson L, Kvarnemo C, Svensson O, Sturve J. (2018). Sand goby—an ecologically relevant species for behavioural ecotoxicology. Fishes 3: 13, doi:10.3390/fishes3010013.
  5. Bausch AR, Gallego MA, Harianto J, Thibodeau P, Bednaršek N, Havenhand JN, Klinger T. Influence of bacteria on shell dissolution in dead gastropod larvae and adult Limacina helicina pteropods under ocean acidification conditions. Marine Biology (2018) 165: 40. https://doi.org/10.1007/s00227-018-3293-3
  6. Bergin C, Wentrup C, Brewig N, Blazejak A, Erséus C, Giere O, Schmid M, De Wit P, Dubilier N. Acquisition of a novel sulfur-oxidizing symbiont in the gutless marine worm Inanidrilus exumae. Applied and Environmental Microbiology (2018) 84: e02267-17. doi:10.1128/AEM.02267-17
  7. Blankers T, Vilaça ST, Waurick I, Gray DA, Hennig RM, Mazzoni CJ, Mayer F,  Berdan EL. (2018), Demography and selection shape transcriptomic divergence in field crickets. Evolution. Accepted Author Manuscript. doi:10.1111/evo.13435

  8. Bouquet J-M, Troedsson C, Novac A, Reeve M, Lechtenbörger AK, Massart W, Skaar KS, Aasjord A, Dupont S, Thompson EM. (2018) Increased fitness of a key appendicularian zooplankton species under warmer, acidified seawater conditions. PLoS ONE 13(1): e0190625. https://doi.org/10.1371/journal.pone.0190625
  9. Boyd PW, Collins S, Dupont S, Fabricius K, Gattuso JP, Havenhand J, Hutchins DA, Riebesell U, Rintoul MS, Vichi M, Biswas H, Ciotti A, Gao K, Gehlen M, Hurd CL, Kurihara H, McGraw CM, Navarro J, Nilsson GE, Passow U, Pörtner HO.  Experimental strategies to assess the biological ramifications of multiple drivers of global ocean change – a review. Global Change Biology, doi:10.1111/gcb.14102
  10. Butlin RK, Smadja CM. 2018. Coupling, reinforcement and speciation. American Naturalist 191: 155-172.
  11. Campanati C, Dupont S, Williams GA, Thiyagarajan V. Differential sensitivity of larvae to ocean acidification in two interacting mollusc species. Marine Environmental Research. (2018) doi: 10.1016/j.marenvres.2018.08.005.
  12. Dahl M, Infantes E, Clevesjö R, Linderholm HW, Björk M, Gullström M. Increased current flow enhances the risk of organic carbon loss from Zostera marina sediments: Insights from a flume experiment. Limnology and Oceanography (2018) 63(6): 2793-2805.
  13. De Wit P, Durland E, Ventura A, Langdon CL. Gene expression correlated with delay in shell formation in larval Pacific oysters (Crassostrea gigas) exposed to experimental ocean acidification provides insights into shell formation mechanisms. BMC Genomics 2018, 19:160
  14. De Wit P, Yamada K, Panova M, André C, Johannesson K. Diet-dependent gene expression highlights the importance of Cytochrome P450 in detoxification of algal secondary metabolites in a marine isopod. Scientific Reports, volume 8, Article number: 16824 (2018)

  15. Diopere E, Vandamme SG, Hablützel PI, Cariani A, Van Houdt J, Rijnsdorp A, Tinti F, FishPopTrace Consortium, Volckaert FAM, Maes GE, Handling editor: Hauser L. Seascape genetics of a flatfish reveals local selection under high levels of gene flow, ICES Journal of Marine Science, Volume 75, Issue 2, 1 March 2018, Pages 675–689, https://doi.org/10.1093/icesjms/fsx160
  16. Espinel-Velasco N, Hoffmann L, Agüera A, Byrne M, Dupont S, Uthicke S, Webster NS Lamare M. Effects of ocean acidification on the settlement and metamorphosis of marine invertebrate and fish larvae: a review. Marine Ecology Progress Series. (2018) doi: 10.3354/meps12754.
  17. Falkenberg LJ, Dupont S & Bellerby R. Approaches to re-consider literature on physiological effects of environmental change: examples from ocean acidification research. Frontiers in Marine Science, section Global Change and the Future Ocean. (2018) 5: 453. doi:10.3389/fmars.2018.00453
  18. Faria R, Chaube P, Morales H, Larsson T, Lemmon AR, Lemmon EM, Rafajlovic M, Panova M, Ravinet M, Johannesson K, Westram AM, Butlin RK. Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes. Molecular Ecology, 2018, doi: 10.1111/mec.14972

  19. Faria R, Triant D, Perdomo­-Sabogal A, Overduin B, Bleidorn C, Santana C, Langenberger D, Dall’Olio G, Indrischek H, Aerts J, et al. (2018) Introducing evolutionary biologists to the analysis of big data: guidelines to organize extended bioinformatics training courses. Evolution: Education and Outreach 11:8. doi:10.1186/s12052-018-0080-z
  20. Faust E, Halvorsen KT, Andersen P, Knutsen H, André C. Cleaner fish escape salmon farms and hybridize with local wrasse populations. Royal Society Open Science. 2018, 5: 171752.
  21. García-Souto D, Alonso S, Costa D, Eirín-López JM, Rolán-Álvarez E, Faria R, Galindo J, Pasantes JJ. (2018) Karyotype characterization of nine periwinkle species (Gastropoda, Littorinidae). Genes 9, 517. doi: 10.3390/genes9110517
  22. Gazda MA, Andrade P, Afonso S, Dilyte J, Archer JP, Lopes RJ, Faria R, Carneiro M. (2018) Signatures of Selection on Standing Genetic Variation Underlie Athletic and Navigational Performance in Racing Pigeons. Molecular Biology and Evolution 35, 1176–1189. doi: 10.1093/molbev/msy030
  23. Ghenu A-H, Blanckaert A, Butlin RK, Kulmuni J, Bank C. 2018. Conflict between heterozygote advantage and hybrid incompatibility in haplodiploids (and sex chromosomes). Molecular Ecology 26: 3093-3103.
  24. Glaus KBJ, Adrian-Kalchhauser I, Piovano S, Appleyard SA, Brunnschweiler JM, Rico C. Fishing for profit or food? Socio-economic drivers and fishers’ attitudes towards sharks in Fiji. Marine Policy, Published online, https://doi.org/10.1016/j.marpol.2018.11.037
  25. Harding KC, Salmon M, Teilmann J, Dietz D, Harkonen T. (2018). Population wide decline in somatic growth in harbour seals – early signs of density dependence. Frontiers in Ecology and Evolution. https://doi.org/10.3389/fevo.2018.00059
  26. Havenhand JN, Filipsson HL, Niiranen S, Troell M, Crépin AS, Jagers S, Langlet D, Matti S, Turner D, Winder M, de Wit P, Anderson LG. Ecological and functional consequences of coastal ocean acidification: Perspectives from the Baltic-Skagerrak System. Ambio (2018). https://doi.org/10.1007/s13280-018-1110-3
  27. Hollander J, Montano-Rendon M, Bianco G, Yang X, Westram AM, Duvaux L, Reid DG, Butlin RK. 2018. Are assortative mating and genital divergence driven by reinforcement? Evolution Letters, https://doi.org/10.1002/evl3.85.
  28. Huang X. Jiang X, Sun M, Dupont S, Huang W, Hu M, Li Q & Wang Y.  Effects of copper on hemocyte parameters in the estuarine oyster Crassostrea rivularis under low pH conditions. Aquatic Toxicology. (2018) 23: 61-68. doi:10.1016/j.aquatox.2018.08.003

  29. Huang X, Liu Y, Liu Z, Zhao Z, Dupont S, Wu F, Huang W, Chen J, Hu M, Lu W, Wang Y. Impact of zinc oxide nanoparticles and ocean acidification on antioxidant responses of Mytilus coruscus. Chemosphere (2018) 196:182-195
  30. Huang X, Liu Z, Xie Z, Dupont S, Huang Q, Wu F, Kong H, Liu L, Sui Y, Lin D, Lu W, Hu M & Wang Y. Oxidative stress induced by titanium dioxide nanoparticles increases under seawater acidification in the thick shell mussel Mytilus coruscus. Marine Environmental Research. 2018 doi: 10.1016/j.marenvres.2018.02.029.
  31. Infantes E, Moksnes PO. Eelgrass seed harvesting: Flowering shoots development and restoration on the Swedish west coast. Aquatic Botany (2018)144:9-19
  32. Jagers S, Matti S, Crépin AS, Langlet D, Havenhand JN, Troell M, Filipsson HL, Galaz VR, Anderson LG. Societal causes of, and responses to, ocean acidification, Ambio
  33. Jahnke M, D'Esposito D, Orrù L, Lamontanara A, Dattolo E, Badalamenti F, Mazzuca S, Procaccini G, Orsini L. Adaptive responses along a depth and a latitudinal gradient in the endemic seagrass Posidonia oceanica.
    Heredity (Edinb). 2018 Jun 28. doi: 10.1038/s41437-018-0103-0.
  34. Jahnke M, Jonsson PR, Moksnes P-O, Loo L-O, Jacobi MN, Olsen JL. Seascape genetics and biophysical connectivity modelling support conservation of the seagrass Zostera marina in the Skagerrak–Kattegat region of the eastern North Sea. Evolutionary Applications, 2018;00:1–17. https://doi.org/10.1111/eva.12589
  35. Johannesson K, Ring AK, Johannesson KB, Renborg E, Jonsson PR, Havenhand JN. Oceanographic barriers to gene flow promote genetic subdivision of the tunicate Ciona intestinalis in a North Sea archipelago. Marine Biology (2018) 165: 126. https://doi.org/10.1007/s00227-018-3388-x
  36. Jonsson PR, Kotta J, Andersson HC, Herkül K, Virtanen E, Nyström Sandman A, Johannesson K. 2018. High climate velocity and population fragmentation may constrain climate-driven range shift of the key habitat former Fucus vesiculosus. Diversity and Distributions. DOI: 10.1111/ddi.12733
  37. Jonsson PR, Wrange AL, Lind U, Abramova A, Ogemark M, Blomberg A. The Barnacle Balanus improvisus as a Marine Model - Culturing and Gene Expression. Journal of Visual Experiments (138), e57825, doi:10.3791/57825 (2018).
  38. Kolora R, Tech M, Weigert A, Saffari A, Kehr S, Costa M, Spröer C, Indrischek H, Chintalapati M, Doose G, Bunk B, Overmann J, Lohse K, Bleidorn C, Henle K, Nowick K, Faria R, Stadler P, Schlegel M. Divergent evolution in the genomes of closely-related lacertids, Lacerta viridis and L. bilineata and implications for speciation. GigaScience, doi:10.1093/gigascience/giy160
  39. Kourtchenko O, Rajala T, Godhe A. Growth of a common planktonic diatom quantified using solid medium culturing. Scientific Reports, volume 8, Article number: 9757 (2018)
  40. Knutsen H, Jorde PE, Hutchings JA, Hemmer‐Hansen J, Grønkjær P, Jørgensen KEM, André C, Sodeland M, Albretsen J, Olsen EM. Stable coexistence of genetically divergent Atlantic cod ecotypes at multiple spatial scales. Evolutonary Applications, 2018. doi: 10.1111/eva.12640
  41. Larsson J, Smolarz K, Świeżak J, Turower M, Czerniawska N, Grahn M. 2018. Multi biomarker analysis of pollution effect on resident populations of blue mussels from the Baltic Sea. Aquatic Toxicology. Epub ahead of print. [DOI 10.1016/j.aquatox.2018.02.024]
  42. Li L, ...[De Wit P].. et.al. Divergence and plasticity shape adaptive potential of the Pacific oyster. Nature Ecology & Evolution (2018)
  43. Linders T, Infantes E, Joyce A, Karlsson T, Ploug H, Hassellöv H, Sköld M, Zetsche E-M (2018) Particle sources and transport in stratified Nordic coastal seas in the Anthropocene. Elementa, Science of the Anthropocene, 6:29
  44. Mattingsdal M, Jentoft S, Tørresen OK, Knutsen H, Hansen MM, Robalo JI, Zagrodzka Z, André C, Gonzalez EB. A continuous genome assembly of the corkwing wrasse (Symphodus melops). Genomics, 2018.
    doi: 10.1016/j.ygeno.2018.04.009
  45. Marandel F, Lorance P, Andrello M, Charrier G, Le Cam S, Trenkel V M (2018) Insights from genetic and demographic connectivity for the management of rays and skates. Canadian Journal of Fisheries and Aquatic Sciences 75, 1291–1302. doi:10.1139/cjfas-2017-0291
  46. Moksnes P-O, Eriander L, Infantes E, Holmer M. (2018) Local regime shifts prevent natural recovery and restoration of lost eelgrass beds along the Swedish west coast. Estuaries and Coasts, doi.org/10.1007/s12237-018-0382-y
  47. Morales HE, Pavlova A, Amos N, Major R, Kilian A, Greening C, Sunnucks P. Concordant divergence of mitogenomes and a mitonuclear gene cluster in bird lineages inhabiting different climates. Nature Ecology & Evolution, Volume 2, pages 1258–1267 (2018).|
  48. Mäkinen H, Sävilammi T, Papakostas S, Leder E, Vøllestad LA, Primmer CR. 2018. Modularity Facilitates Flexible Tuning of Plastic and Evolutionary Gene Expression Responses During Early Divergence, Genome Biology and Evolution, evx278, https://doi.org/10.1093/gbe/evx278.
  49. Olofsson M, Kourtchenko O, Zetsche EM, Marchant HK, Whitehouse MJ, Godhe A, Ploug H. 2018. High single-cell diversity in carbon and nitrogen assimilations by a chain-forming diatom across a century. Environmental Microbiology, 2018 Oct 2. doi: 10.1111/1462-2920.14434. [Epub ahead of print]
  50. Pansch C, Scotti M, Barboza FR, et al. Heat waves and their significance for a temperate benthic community: A near‐natural experimental approachGlobal Change Biology 2018;00:1–11. https://doi.org/10.1111/gcb.14282
  51. Pansch C, Hattich GSI, Heinrichs ME, Pansch A, Zagrodzka Z, Havenhand JN (2018) Long-term exposure to acidification disrupts reproduction in a marine invertebrate. PLoS ONE 13(2): e0192036. https://doi.org/10.1371/journal.pone.0192036
  52. Parker DJ, Wiberg RAW, Trivedi U, Tyukmaeva VI, Gharbi K, Butlin RK, Hoikkala A, Kankare M, Ritchie, MG. 2018. Inter- and intra-specific genomic divergence in Drosophila montana shows evidence for cold adaptation. Genome Biology and Evolution 10: 2086–2101.
  53. Pincheira-Donoso D, Tregenza T, Butlin RK, Hodgson DJ. 2018. Sexes and species as rival units of niche saturation during community assembly. Global Ecology & Biogeography 5: 593-603.
  54. Pereda-Briones L, Infantes E, Orfila A, Tomas F, Terrados J. (2018) Dispersal of seagrass propagules: substratum and hydrodynamic effects. Marine Ecology Progress Series. 593: 47-59
  55. Pertoldi C, Jensen LF, Alstrup AKO, Munk OL, Pedersen TB, Sonne C, Dietz R, Daugaard-Petersen T, Kortegaard HE, Tange-Olsen M, Harding KC, Hammer Jensen T. (2018). Prevalence of skull pathologies in European harbour seals (Phoca vitulina) during 1981-2014. Mammal Research, 63: 55-63.
  56. Prokkola JM, Nikinmaa M, Lewis M, Anttila K, Kanerva M, Ikkala K, Seppänen E, Kolari I, Leder EH. 2018. Cold temperature represses daily rhythms in the liver transcriptome of a stenothermal  teleost under decreasing day length, Journal of Experimental Biology,  doi:10.1242/jeb.170670
  57. Rivas MJ, Saura M, Pérez-Figueroa A, Panova M, Johansson T, André C, Caballero A, Rolán-Alvarez E, Johannesson K, Quesada H. (2018). Population genomics of parallel evolution in gene expression and gene sequence during ecological adaptation. Scientific Reports, 8: 16147
  58. Reusch TBH, …Johannesson K, …, et al. The Baltic Sea as a time machine for the future coastal ocean. Science Advances  09 May 2018: Vol. 4, no. 5, eaar8195, DOI: 10.1126/sciadv.aar8195
  59. Rudman SM, Barbour MA, Csilléry K, Gienapp P, Guillaume F, Hairston Jr NG, Hendry AP, Lasky JR, Rafajlović M, Räsänen K, Schmidt PS, Seehausen O, Therkildsen NO, Turcotte MM, Levine JM. What genomic data can reveal about eco-evolutionary dynamics. Nature Ecology & Evolution, (2018)2, 9–15, doi:10.1038/s41559-017-0385-2
  60. Sandström A, Lundmark C, Andersson K, Johannesson K, Laikre L. Understanding and bridging the conservation-genetics gap in marine conservation. Conservation Biology, 2018, Dec 22. doi: 10.1111/cobi.13272. [Epub ahead of print]
  61. Saremi S, Isaksson M, Harding KC. 2018. Bio accumulation of radioactive Caesium in marine mammals in the Baltic Sea – reconstruction of a historical time series. Science of The Total Environment, 631: 7-12.
  62. Sefbom J, Kremp A, Rengefors K, Jonsson PR, Sjöqvist C, Godhe A. A planktonic diatom displays genetic structure over small spatial scales. Environmental Microbiology, 2018 Apr 3. doi: 10.1111/1462-2920.14117
  63. Sundqvist L, Godhe A, Jonsson PR, Sefbom J. The anchoring effect-long-term dormancy and genetic population structure. The ISME Journal (2018) Aug 1. doi: 10.1038/s41396-018-0216-8.
  64. Świątek P, De Wit P, Jarosz N, Chajec Ł, Urbisz AZ.  Micromorphology of ovaries and oogenesis in Grania postclitellochaeta (Clitellata: Enchytraeidae). Zoology (2018) 126: 119-127. doi:10.1016/j.zool.2017.11.004
  65. Töpel M, Pinder MIM, Johansson ON, Kourtchenko O, Godhe A, Clarke AK. 2018. Complete genome sequence of Loktanella vestfoldensis strain SMR4r, a novel strain isolated from a culture of the chain-forming diatom Skeletonema marinoi. Genome Announcements 6:e01558-17
  66. Töpel M, Pinder MIM, Johansson ON, Kourtchenko O, Godhe A, Clarke AK. Whole-Genome Sequence of the Novel Antarctobacter heliothermus Strain SMS3, Found in Association with the Marine Diatom Skeletonema marinoi. Journal of Genomics 2018; 6:113-116. doi:10.7150/jgen.27637.
  67. Vestbo S, Obst M, Quevedo Fernandez FJ, Intanai I, Funch P. Present and Potential Future Distributions of Asian Horseshoe Crabs Determine Areas for Conservation. Frontier Marine Science, 2018, https://doi.org/10.3389/fmars.2018.00164

  68. Westram AM, Rafajlovic M, Chaube P, Faria R, Larsson T, Panova M, Ravinet M, Blomberg A, Mehlig B, Johannesson K, Butlin R. Clines on the seashore: The genomic architecture underlying rapid divergence in the face of gene flow. Evolution Letters, 2018, https://doi.org/10.1002/evl3.74
  69. Wu FL, Xie Z, Lan Y, Dupont S, Sun M, Cui S, Huang X, Huang W, Liu L, Hu M, Lu W & Wang Y. Short-term exposure of Mytilus coruscus to decreased pH and salinity change impacts immune parameters of their haemocytes. Frontiers in Physiology. 2018 doi:10.3389/fphys.2018.00166


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